Chemical synapses have some advantages that gap junctions do not provide.
- A synapse allows one set of ionic currents to be transformed into another set, showing ionic selectivity. For example, sodium and calcium influx at the presynaptic terminal might translate to chloride influx to make the synapse inhibitory.
- Gap junctions increase the conductance of the cell membrane, which can reduce the fidelity of signals as they propagate along the dendrite. In contrast, an inactive synapse does not pass currents, virtually having no effect on the postsynaptic cell.
- Because chemical synapses generate their own ionic currents, they are also free to modify the speed of those currents. This is difficult to achieve with gap junctions.