Naina B. answered 12/03/15
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Naina, a versatile tutor
I think that question is worded improperly, supernatant is liquid on the top of pellet and it is always separate from pellet.
I think the question is:
explain why sometimes the DNA is found in the supernatant and other times it is in the pellet
Ideally DNA needs to be precipitated with pellet and should not remain in supernatant. DNA is acidic in nature and therefore, needs optimum salt concentration in the buffer to be pelleted from a solution. At very low salt concentration or without salt DNA would remain in supernatant. This is why the supernatant is saved to add more salt and reprecipitate DNA if there is no pellet or there is negligible amount of DNA in the pellet.
Hope this helps.