Eric B. answered 05/29/23
PhD in Microbiology to 10+ years of Teaching and Mentoring Experience
In practice, everything that babies are exposed to from birth forward provides exposure to the microbes that will populate nearly every portion of their bodies, inside and out. While still debated in the scientific literature, it is predicted that the first major exposure to microbes happens during delivery - where the offspring is exposed to microbes from the birth canal and GI tract. In this way there is vertical transmission of microbes from mother to offspring, many of which will likely have cellulolytic activity given their intimate association with the mother. Moving forward, everything the offspring consumes or put in their mouths is a source of microbial exposure and seeds microbes into the GI tract. Mothers milk, the skin baby nurses from, objects from their environment, etc. The duration of this assembly phase and the ultimate composition of microbes varies by species, but over time, via complex communication between host and microbes, a complete microbial community will assemble filling all available niches and host and microbe will provide critical functions for one another. Like how microbes can provide cellulolytic activity to mammals that subsist predominantly on cellulose based diets. What results is a stable collection of microbes in the gut that is resistant to disruption and disturbances over time, much like any other complex ecosystem and mutualistic interactions between microbe and host.