
Bardia G. answered 07/05/19
B.S in Biochemistry and Molecular Biology from UC Davis
Interesting question. Hydrogen is the most abundant element in the universe and its most common isotope is a single proton. So the name "hydrogen" and the term "proton" are essentially interchangeable.
Protons are incredibly important in biology. So important they have a specific unit of measurement associated with them. The pH scale is a measure of how much protons are in any chemical environment and range from 1 to 14, where 1 is incredibly acidic and 14 is incredibly basic and 7 is neutral (The pH of deionized water is 7).
The pH is a calculation that takes the negative base 10 log of the concentration of protons and provides an easy to interpret number for the acidity or basicity.
As mentioned before, protons are important to biology. All of life takes place in an optimal pH range and does not like deviations from that set point. All the proteins in your body and the microorganisms that inhabit your mouth and intestines have an optimal pH they like to live at.
Generally, the mouth is acidic thanks to the activity of those microorganisms producing lactic acid after they munch on all the leftover food in your mouth. These organisms love sugar, and will start producing acid like crazy when you consume sweets, degrading the enamel of your teeth. Diets heavy in grains and sugars would thus produce more acidic breath (higher concentration of protons) thanks to these bacteria.
Additionally, stomach acid is used to digest food and has the highest concentration of protons in your body (pH of around 2) so when you exhale some protons will inevitably be dragged along from here as well.
Brush your teeth!