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Genetics

Written by tutor Trevor J.

What is Genetics? Genetics is the study of Genes. Genes are units of heredity which encode genetic characteristics, or traits. These genes are passed from generation to generation encoded on Chromosomes, gigantic structures made of tightly organized DNA. In some species, like Prokaryotes, they are very small units, with all extra space removed. In others, like most Eukaryotes, genes are vast sprawling structures that can cover millions of bases of DNA.

Not every gene is the same. Take one of your own genes as an example. You have two copies of that gene, one from each parent. These genes may be encoded slightly differently, and thus can have stronger or weaker effects. These differently coded versions of a gene are called Alleles. Alleles arise because of Mutation, which is an inheritable change in a gene. Parts of the genetic code for that gene may be changed, added, or removed. That mutation is then passed on to your children. Mutations can have many different effects, some positive, some very negative (like cancer), and many mutations have no effect whatsoever.

Genes do not float around randomly inside the cell. They are organized into structures called Chromosomes. Every eukaryotic species has 2 sets of chromosomes, one from each parent. In the higher eukaryotes they are carried by special cells called Gametes; the sperm and the egg.

Human Karyotype image

If genes are on chromosomes, how come you don’t inherit one chromosome from your father, and pass the same chromosome along to your children? The reason is called Meiosis. Most cells divide in a process called Mitosis. Meiosis is a specialized method of cell division for the gametes, in which, unlike Mitosis, each maternal chromosome is able to swap material, or cross over, with its companion paternal chromosome, and vice versa. This means that each chromosome you get from your mother will have some genes from her father, and some from her mother. The exception is the sex chromosomes, which we’ll discuss later. This leads to an interesting phenomenon called Linkage. Linkage basically tells you what percentage of the time 2 traits cross over together. If a parent has 2 traits, and you continually see either both traits together in offspring or neither trait in offspring, then that indicates a strong linkage. If one trait crosses over to another chromosome, so does the other. Other genes assort completely independently. These genes are Unlinked. Linkage actually physically translates into distance on a chromosome. If genes are close together on a chromosome, they tend to cross over together. Before molecular techniques were available to look at DNA directly, the only way to tell where a gene was involved linkage. If you knew that a gene was linked with other genes, and you knew the position of those other genes, you could figure out roughly where that gene was.

Since a gene is a unit of information, how can we tell what that information is, and when it’s changed? One answer is by looking at the Traits that that gene affects. A trait is a measurable attribute such as height, eye color, or good(or bad) coordination. If I have an allele that causes baldness, for example, the allele I have is called my Genotype. The baldness that the allele causes is my Phenotype. This is a very important difference. Your genotype is your genetic base, the genes that encode your traits. The phenotype shows the traits those genes affect, plus the effects of the environment on those traits. A genotype that encodes the trait of height can still produce a shorter person, if that person doesn’t get proper nutrition. Similarly, grapes with the same genotype will taste different if grown in different soil and climate. Each trait is influenced by the environment, but some are mostly genetic with little environmental input, and others are mostly environmental with little contribution from your genes.

So, how can you tell if a trait has a genetic component, or if it is primarily environmental? In humans, we often do this by using twins. There are two types of twins, Identical and Fraternal. Identical twins are Clones of each other, and come from the same fertilized egg. The term Clones means they are genetically identical; they share 100% of their DNA. Fraternal twins have much less shared DNA. They come from two separate eggs fertilized at the same time. Thus, they share roughly 50% of their genome, the same as most siblings. Since no two people are identical, twins will have some environmental differences in their upbringing. This causes them to vary, and in identical twins, all of the variations are due to environmental differences. Fraternal twins vary in genotype and environment, and so vary much more. Therefore, what you do if you want to discover if a trait has a genetic component is you look at a large number of each type of twin. If more identical twins share the trait than fraternal twins, you know that there is a genetic component to the trait, because the identical twins share more DNA. If identical twins vary just as much in a single trait as fraternal twins, then that trait is mostly or totally environmental.

In other species, such as yeast and fruit flies, what we often do to find a trait’s genetic component is do a mutation screen. How we do this can vary, depending on the type of mutations we want. Exposure to UV light causes deletion or transposition of large chunks of DNA. We can also use chemical agents that cause single bases to be changed. A third, more modern option is to use jumping genes. These are genes which hop through the genome from generation to generation, and can be turned on or suppressed when we like. . They hop semi-randomly, and the type of jumping gene you choose can affect where it will go. If they jump into the middle of another gene, they disrupt it. What we do, therefore, is expose the parents to the mutagen, and then let them breed. Their offspring will have random mutations. We then screen these mutants by testing for variations in the trait that we are interested in. When we see those mutations, we know we have mutated a gene that affects the trait we are looking at.

Now, if the gene you have causes the phenotype you get, that would be nice and simple. However, since you get different alleles of the gene from your mother and father, what happens if your maternal and paternal alleles would cause different phenotypes? The answer depends on the alleles in question. Some alleles are Dominant, which means that the phenotype that they cause will get expressed instead of the phenotype of the other allele. Other alleles are Recessive, which means that their phenotype only gets expressed if both alleles are the same, or very similar. Most other alleles are dominant to them. Some genes share dominance, and are called Codominant. The allele that causes a phenotype you would consider normal is called Wild Type, abbreviated as WT. The WT allele is usually dominant over most other alleles, but some particularly strong alleles can override the wild type and are dominant to it.

Human Pedigree Chart

We just discussed the simple genetic interactions. There are also complex genetic interactions. Some involve the sex chromosomes. The sex chromosomes are different in each species. Some species, like the fly, are female if they have 2 X chromosomes, and only male if they have an XY. An XXY is female. This is different from humans, where the Y chromosome is all that is needed for a male, and so XX is female, XY is male, and XXY is also male(and sterile). Note that the XXY genotype is extremely rare, and happens because of a mistake in meiosis. One of the chromosomes fails to separate from its’ partner and ends up in the same gamete. Sex chromosomes are also notable because, in many species, it is the male gamete that decides the gender of the offspring. This is because the female is XX, and thus can only contribute an X chromosome. The male can contribute either an X or a Y chromosome, and thus determines whether the offspring is male or female. This means that traits on these chromosomes can get confusing. The Y chromosome is a very short chromosome, and there are not many genes on it. However, in humans, only males have a Y chromosome, so any genes on the Y chromosome are expressed only in males. Females can express traits on the X chromosome, but this is also tricky, as only one copy of the X chromosome is needed in a cell. (Which is why XY males survive with only one X chromosome, and why XXY males survive with two.) Females get around this by inactivating one of the X chromosomes in each cell, forming a Barr Body. This does, however, mean that females are only certain to express a trait on the X chromosome if they have the allele on both chromosomes, whereas males, with only one X chromosome, always express alleles on the X chromosome. This means that any allele on the X chromosome has a 50% chance of being in each offspring if it is from the mother. If it is from the father, all of the females will get it, since they get his X, and none of the males will.

There are other types of complex inheritance. For example, some traits involve multiple genes, and some alleles act differently depending on whether you get the allele from your father or mother. Those are advanced topics, though, and ones that scientists still investigate today.

Genetic Cross Punnett Square

Now, you can practice your knowledge with this genetics quiz!

Genetics Quiz

If Fraternal Twins are equally likely to both have a trait as Identical Twins are, that trait is most likely to be:

A. Genetic
B. Environmental
C. A and B
D. neither A nor B
The correct answer here would be B.

If a disease shows up in a grandfather, all of his sons, and all of his grandsons, and never in women, it is most likely to be:

A. X-linked
B. Recessive
C. Y-linked
D. Dominant
The correct answer here would be C.

Genes for coat color in cats are found on the X chromosome. A tortoiseshell or calico cat has multiple colors, and is almost always female. Male calico cats are sterile and very rare. What is the genotype of male calico cats?

A. XY
B. XX
C. -Y
D. XXY
The correct answer here would be D.
If two traits do not assort independently, they show __________.
The correct answer here would be linkage.
{linkage|Linkage}
In the question above, male tortoiseshell cats are rare. Their cells also contain _________, which you normally only find in the cells of female cats.
The correct answer here would be Barr bodies.
{Barr bodies|barr bodies|Barrbodies}

You inherit 2 alleles of every gene except for those on the:

A. X chromosome
B. Y chromosome
C. Both A and B
D. XXY chromosomes
The correct answer here would be C.

Identical twins are:

A. clones
B. male
C. different sexes
D. formed from different eggs
The correct answer here would be A.
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